Discoveries

An list of cool discoveries people have submitted for the Informatics Collaboration Cafe

You can find the form to add new discoveries here: https://forms.gle/PCpRe214Jjptm8Cz8

tidytuesday

TidyTuesday is a weekly social data project. Data is released weekly, and folk share their approaches for analysing it

Mateus Harrington

targets

Reproducibility

A Make-like pipeline tool for statistics and data science in R

Mateus Harrington

MultiQC, Atria(maybe)

Reproducibility

MultiQC is the standard in bioinformatics reporting.

Ilastik

image processing

Ilastik allows to segment images based on live training. You draw on the image examples of the different elements you want to segment and it updates the model live.

Fastremap

array handling?

Renumber and relabel Numpy arrays at C++ speed and physically convert rectangular Numpy arrays between C and Fortran order using an in-place transposition.…

janitor

Has super handy function for cleaning data, particularly cleaning column names

Mateus Harrington

here

Reproducibility

A little package for managing file paths in R projects. Using here you can always get file paths that’re relative to the project root which’re expanded to the full system…

Mateus Harrington